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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G01330.1
PEP
AT3G01330.1
Position on the Genome Chromosome Chr3
Start Position 124596
End Position 126805
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00402375
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Winged helix-like DNA-binding domain superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
E2F transcription factor-like E2FF
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF02319
Pfam Description Details
InterPro ID
IPR015633,IPR036390,IPR003316,IPR036388
InterPro Description Details
GO ID
GO:0003700,GO:0045944,GO:0007049,GO:0005634,GO:0000122,GO:0005737,GO:0000981,GO:0003677,GO:0043565,GO:0008134,GO:0051726,GO:0090575
GO Description Details
GOslim ID
GO:0006351,GO:0005515,GO:0005737,GO:0005694,GO:0007049,GO:0005634,GO:0003676,GO:0050789,GO:0065009,GO:0005667
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
E2F/DP family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
E2F transcription factor-like E2FF
OrthoDB(1 item)
124892at33090
Winged helix-like DNA-binding domain superfamily
Pfam(1 item)
 
E2F/DP family winged-helix DNA-binding domain
InterPro(4 items)
 
E2F/DP family, winged-helix DNA-binding domain
 
WH-like_DNA-bd_sf
Gene ontology(12 items)
MF
DNA-binding transcription factor activity
BP
positive regulation of transcription by RNA polymerase II
BP
negative regulation of transcription by RNA polymerase II
MF
DNA-binding transcription factor activity, RNA polymerase II-specific
MF
sequence-specific DNA binding
MF
transcription factor binding
BP
regulation of cell cycle
CC
RNA polymerase II transcription regulator complex
GO slim(10 items)
BP
transcription, DNA-templated
MF
protein binding
MF
nucleic acid binding
BP
regulation of biological process
BP
regulation of molecular function
CC
transcription regulator complex

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.