Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G01220.1
PEP
AT3G01220.1
Position on the Genome Chromosome Chr3
Start Position 73599
End Position 75295
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00579382
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Homeobox domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Homeobox-leucine zipper protein ATHB-20
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF02183,PF00046
Pfam Description Details
InterPro ID
IPR001356,IPR000047,IPR003106,IPR017970,IPR009057
InterPro Description Details
GO ID
GO:0005634,GO:0043565,GO:0003700,GO:0009733,GO:0000981,GO:0045893
GO Description Details
GOslim ID
GO:0050789,GO:0065009,GO:0005634,GO:0003676,GO:0005694,GO:0006351,GO:0050896
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
HD-ZIP family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G01220
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Homeobox-leucine zipper protein ATHB-20
OrthoDB(1 item)
141173at33090
Homeobox domain
Pfam(2 items)
 
Homeobox associated leucine zipper
 
Homeobox domain
InterPro(5 items)
 
Homeobox domain
 
Leucine zipper, homeobox-associated
 
Homeobox-like_sf
Gene ontology(6 items)
MF
sequence-specific DNA binding
MF
DNA-binding transcription factor activity
BP
response to auxin
MF
DNA-binding transcription factor activity, RNA polymerase II-specific
BP
positive regulation of transcription, DNA-templated
GO slim(7 items)
BP
regulation of biological process
BP
regulation of molecular function
MF
nucleic acid binding
BP
transcription, DNA-templated
BP
response to stimulus

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.