Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT3G01150.1
PEP
AT3G01150.1
Position on the Genome Chromosome Chr3
Start Position 51732
End Position 54344
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00294539
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
PTBPH1/PTBPH2, RNA recognition motif 1
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Polypyrimidine tract-binding protein homolog 1
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF11835,PF00076
Pfam Description Details
InterPro ID
IPR000504,IPR034792,IPR035979,IPR034793,IPR021790,IPR034794,IPR012677
InterPro Description Details
GO ID
GO:0000381,GO:0008380,GO:0006397,GO:0000932,GO:0005737,GO:0006417,GO:0043484,GO:0009845,GO:0003729,GO:0005634
GO Description Details
GOslim ID
GO:0032501,GO:0050789,GO:0005737,GO:0005634,GO:0032502,GO:0006396,GO:0043232,GO:0000375,GO:0003676
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT3G01150
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Polypyrimidine tract-binding protein homolog 1
OrthoDB(1 item)
96029at33090
PTBPH1/PTBPH2, RNA recognition motif 1
Pfam(2 items)
 
Domain of unknown function (DUF3355)
 
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
InterPro(7 items)
 
RNA recognition motif domain
 
PTBPH1/PTBPH2_RRM1
 
RBD_domain_sf
 
PTBPH1/PTBPH2_RRM2
 
Domain of unknown function DUF3355
 
PTBPH1/PTBPH2_RRM3
 
Nucleotide-bd_a/b_plait_sf
Gene ontology(10 items)
BP
regulation of alternative mRNA splicing, via spliceosome
BP
mRNA processing
BP
regulation of translation
BP
regulation of RNA splicing
BP
seed germination
GO slim(9 items)
BP
multicellular organismal process
BP
regulation of biological process
BP
developmental process
BP
RNA processing
CC
intracellular non-membrane-bounded organelle
BP
RNA splicing, via transesterification reactions
MF
nucleic acid binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.