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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G45650.1
PEP
AT2G45650.1
Position on the Genome Chromosome Chr2
Start Position 18804453
End Position 18806291
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00086948
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Transcription factor, MADS-box
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
AGAMOUS-like protein 6
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF01486,PF00319
Pfam Description Details
InterPro ID
IPR033896,IPR002100,IPR036879,IPR002487
InterPro Description Details
GO ID
GO:0000977,GO:0045944,GO:0003700,GO:0046983,GO:0005634
GO Description Details
GOslim ID
GO:0003676,GO:0005634,GO:0050789,GO:0006351,GO:0005515,GO:0065009
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
MIKC_MADS family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
AGAMOUS-like protein 6
OrthoDB(1 item)
142696at33090
Transcription factor, MADS-box
Pfam(2 items)
 
K-box region
 
SRF-type transcription factor (DNA-binding and dimerisation domain)
InterPro(4 items)
 
MADS_MEF2-like
 
Transcription factor, MADS-box
 
TF_MADSbox_sf
 
Transcription factor, K-box
Gene ontology(5 items)
MF
RNA polymerase II transcription regulatory region sequence-specific DNA binding
BP
positive regulation of transcription by RNA polymerase II
MF
DNA-binding transcription factor activity
MF
protein dimerization activity
GO slim(6 items)
MF
nucleic acid binding
BP
regulation of biological process
BP
transcription, DNA-templated
MF
protein binding
BP
regulation of molecular function

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.