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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G43970.1
PEP
AT2G43970.1
Position on the Genome Chromosome Chr2
Start Position 18205535
End Position 18208031
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00518927
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Winged helix-like DNA-binding domain superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
LARP6b
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF05383
Pfam Description Details
InterPro ID
IPR006630,IPR036390,IPR035979,IPR012677,IPR034878,IPR036388,IPR002344
InterPro Description Details
GO ID
GO:0005634,GO:1990904,GO:0003723,GO:0006396
GO Description Details
GOslim ID
GO:1990904,GO:0005634,GO:0003676,GO:0006396
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
OrthoDB(1 item)
120567at33090
Winged helix-like DNA-binding domain superfamily
Pfam(1 item)
 
La domain
InterPro(7 items)
 
La-type HTH domain
 
RBD_domain_sf
 
Nucleotide-bd_a/b_plait_sf
 
La-rel_plant_RRM
 
WH-like_DNA-bd_sf
Gene ontology(4 items)
CC
ribonucleoprotein complex
BP
RNA processing
GO slim(4 items)
CC
ribonucleoprotein complex
MF
nucleic acid binding
BP
RNA processing

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.