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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G42330.1
PEP
AT2G42330.1
Position on the Genome Chromosome Chr2
Start Position 17631831
End Position 17634089
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00122645
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
G-patch domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Septin and tuftelin-interacting protein 1 homolog 2
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF01585,PF07842,PF12457
Pfam Description Details
InterPro ID
IPR022783,IPR022159,IPR000467
InterPro Description Details
GO ID
GO:0006468,GO:0010600,GO:0071008,GO:0003677,GO:0004674,GO:0000390
GO Description Details
GOslim ID
GO:0006464,GO:0022411,GO:0000375,GO:0003676,GO:0005681,GO:0006793,GO:0016740,GO:0042445,GO:0050789,GO:0030532
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT2G42330
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Septin and tuftelin-interacting protein 1 homolog 2
OrthoDB(1 item)
84986at33090
G-patch domain
Pfam(3 items)
 
G-patch domain
 
GC-rich sequence DNA-binding factor-like protein
 
Tuftelin interacting protein N terminal
InterPro(3 items)
 
GC-rich sequence DNA-binding factor-like domain
 
Tuftelin interacting protein, N-terminal domain
 
G-patch domain
Gene ontology(6 items)
BP
protein phosphorylation
BP
regulation of auxin biosynthetic process
CC
U2-type post-mRNA release spliceosomal complex
MF
protein serine/threonine kinase activity
BP
spliceosomal complex disassembly
GO slim(10 items)
BP
cellular protein modification process
BP
cellular component disassembly
BP
RNA splicing, via transesterification reactions
MF
nucleic acid binding
CC
spliceosomal complex
BP
phosphorus metabolic process
MF
transferase activity
BP
hormone metabolic process
BP
regulation of biological process
CC
small nuclear ribonucleoprotein complex

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.