Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G41500.1
PEP
AT2G41500.1
Position on the Genome Chromosome Chr2
Start Position 17304319
End Position 17306855
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00336984
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
WD40 repeat
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
U4/U6 small nuclear ribonucleoprotein PRP4-like protein
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00400,PF08799
Pfam Description Details
InterPro ID
IPR015943,IPR036285,IPR020472,IPR017986,IPR019775,IPR001680,IPR014906,IPR036322
InterPro Description Details
GO ID
GO:0009560,GO:0000398,GO:0001709,GO:0030621,GO:0016607,GO:0009553,GO:0005681,GO:0017070,GO:0007267,GO:0046540
GO Description Details
GOslim ID
GO:0003676,GO:0000375,GO:0051704,GO:0007154,GO:0005634,GO:0032501,GO:0032502,GO:0005681,GO:0030532,GO:0000003
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT2G41500
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
U4/U6 small nuclear ribonucleoprotein PRP4-like protein
OrthoDB(1 item)
77505at33090
WD40 repeat
Pfam(2 items)
 
WD domain, G-beta repeat
 
pre-mRNA processing factor 4 (PRP4) like
InterPro(8 items)
 
WD40/YVTN_repeat-like_dom_sf
 
G-protein_beta_WD-40_rep
 
WD40_repeat_dom
 
WD40_repeat_CS
 
Pre-mRNA processing factor 4 (PRP4)-like
 
WD40_repeat_dom_sf
Gene ontology(10 items)
BP
embryo sac egg cell differentiation
BP
mRNA splicing, via spliceosome
BP
cell fate determination
MF
U4 snRNA binding
CC
nuclear speck
BP
embryo sac development
CC
spliceosomal complex
MF
U6 snRNA binding
BP
cell-cell signaling
CC
U4/U6 x U5 tri-snRNP complex
GO slim(10 items)
MF
nucleic acid binding
BP
RNA splicing, via transesterification reactions
BP
multi-organism process
BP
cell communication
BP
multicellular organismal process
BP
developmental process
CC
spliceosomal complex
CC
small nuclear ribonucleoprotein complex

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.