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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G38340.1
PEP
AT2G38340.1
Position on the Genome Chromosome Chr2
Start Position 16067447
End Position 16068181
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00317976
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
AP2/ERF domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Dehydration-responsive element-binding protein 2E
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00847
Pfam Description Details
InterPro ID
IPR036955,IPR001471,IPR016177
InterPro Description Details
GO ID
GO:0043565,GO:0045893,GO:0000976,GO:0003700,GO:0009738,GO:0009651,GO:0009414,GO:0005634,GO:0034605
GO Description Details
GOslim ID
GO:0050896,GO:0005634,GO:0006351,GO:0050789,GO:0065009,GO:0003676,GO:0007154
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
ERF family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Dehydration-responsive element-binding protein 2E
OrthoDB(1 item)
193854at33090
AP2/ERF domain
Pfam(1 item)
 
AP2 domain
InterPro(3 items)
 
AP2/ERF_dom_sf
 
AP2/ERF domain
 
DNA-bd_dom_sf
Gene ontology(9 items)
MF
sequence-specific DNA binding
BP
positive regulation of transcription, DNA-templated
MF
transcription regulatory region sequence-specific DNA binding
MF
DNA-binding transcription factor activity
BP
abscisic acid-activated signaling pathway
BP
response to salt stress
BP
response to water deprivation
BP
cellular response to heat
GO slim(7 items)
BP
response to stimulus
BP
transcription, DNA-templated
BP
regulation of biological process
BP
regulation of molecular function
MF
nucleic acid binding
BP
cell communication

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.