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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G32940.1
PEP
AT2G32940.1
Position on the Genome Chromosome Chr2
Start Position 13972218
End Position 13976856
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00319854
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Argonaute, linker 1 domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Protein argonaute 6
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF02170,PF16486,PF08699,PF02171,PF16488
Pfam Description Details
InterPro ID
IPR012337,IPR003165,IPR036085,IPR014811,IPR036397,IPR032474,IPR003100,IPR032472
InterPro Description Details
GO ID
GO:0006342,GO:0035197,GO:0051607,GO:0006417,GO:0030422,GO:0006306,GO:0005634
GO Description Details
GOslim ID
GO:0051276,GO:0016458,GO:0002376,GO:0005634,GO:0044419,GO:0050789,GO:0006351,GO:0050896,GO:0003676,GO:0006396,GO:0006304
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT2G32940
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Protein argonaute 6
OrthoDB(1 item)
12478at33090
Argonaute, linker 1 domain
Pfam(5 items)
 
PAZ domain
 
N-terminal domain of argonaute
 
Argonaute linker 1 domain
 
Piwi domain
 
Argonaute linker 2 domain
InterPro(8 items)
 
RNaseH-like_sf
 
Argonaute, linker 1 domain
 
Protein argonaute, N-terminal
 
Argonaute linker 2 domain
Gene ontology(7 items)
BP
chromatin silencing
MF
siRNA binding
BP
defense response to virus
BP
regulation of translation
BP
production of siRNA involved in RNA interference
BP
DNA methylation
GO slim(11 items)
BP
chromosome organization
BP
gene silencing
BP
immune system process
BP
interspecies interaction between organisms
BP
regulation of biological process
BP
transcription, DNA-templated
BP
response to stimulus
MF
nucleic acid binding
BP
RNA processing
BP
DNA modification

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.