Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G31730.1
PEP
AT2G31730.1
Position on the Genome Chromosome Chr2
Start Position 13487783
End Position 13488593
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00295126
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Myc-type, basic helix-loop-helix (bHLH) domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Transcription factor bHLH154
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
NA
Pfam Description
InterPro ID
IPR011598,IPR036638
InterPro Description Details
GO ID
GO:0046983,GO:0003700,GO:0003677,GO:0001228,GO:0005634,GO:0009739
GO Description Details
GOslim ID
GO:0003676,GO:0050896,GO:0006351,GO:0005634,GO:0065009,GO:0050789,GO:0005694,GO:0005515
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
bHLH family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Transcription factor bHLH154
OrthoDB(1 item)
197959at33090
Myc-type, basic helix-loop-helix (bHLH) domain
InterPro(2 items)
 
Myc-type, basic helix-loop-helix (bHLH) domain
 
HLH_DNA-bd_sf
Gene ontology(6 items)
MF
protein dimerization activity
MF
DNA-binding transcription factor activity
MF
DNA-binding transcription activator activity, RNA polymerase II-specific
BP
response to gibberellin
GO slim(8 items)
MF
nucleic acid binding
BP
response to stimulus
BP
transcription, DNA-templated
BP
regulation of molecular function
BP
regulation of biological process
MF
protein binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.