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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G27900.1
PEP
AT2G27900.1
Position on the Genome Chromosome Chr2
Start Position 11877654
End Position 11885238
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00155519
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Syndetin, C-terminal
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
At2g27890
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF10475,PF10474
Pfam Description Details
InterPro ID
IPR019514,IPR040047,IPR019515
InterPro Description Details
GO ID
GO:1990745,GO:0042147,GO:0000149,GO:0032456,GO:0003729,GO:0005829
GO Description Details
GOslim ID
GO:0032991,GO:0003676,GO:0016192,GO:0005737,GO:0051641,GO:0005515,GO:0005575,GO:0005768
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT2G27900
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
At2g27890
OrthoDB(1 item)
107087at33090
Syndetin, C-terminal
Pfam(2 items)
 
Vacuolar-sorting protein 54, of GARP complex
 
Protein of unknown function C-terminus (DUF2451)
InterPro(3 items)
 
Syndetin, C-terminal
 
Vacuolar protein sorting-associated protein 54, N-terminal
Gene ontology(6 items)
BP
retrograde transport, endosome to Golgi
MF
SNARE binding
BP
endocytic recycling
GO slim(8 items)
CC
protein-containing complex
MF
nucleic acid binding
BP
vesicle-mediated transport
BP
cellular localization
MF
protein binding
CC
cellular_component

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.