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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G25900.1
PEP
AT2G25900.1
Position on the Genome Chromosome Chr2
Start Position 11041817
End Position 11042764
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00150774
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger, CCCH-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Zinc finger CCCH domain-containing protein 23
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF18044
Pfam Description Details
InterPro ID
IPR041367,IPR000571
InterPro Description Details
GO ID
GO:0003723,GO:0003700,GO:0006355,GO:0046872,GO:0061157,GO:0003677,GO:0005737,GO:0003727
GO Description Details
GOslim ID
GO:0043167,GO:0065008,GO:0003676,GO:0065009,GO:0006351,GO:0050789,GO:0005737,GO:0009057,GO:0016070
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
C3H family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Zinc finger CCCH domain-containing protein 23
OrthoDB(1 item)
117418at33090
Zinc finger, CCCH-type
Pfam(1 item)
 
zf-CCCH_4
InterPro(2 items)
 
Zinc finger, CCCH-type
Gene ontology(8 items)
MF
DNA-binding transcription factor activity
BP
regulation of transcription, DNA-templated
MF
metal ion binding
BP
mRNA destabilization
MF
single-stranded RNA binding
GO slim(9 items)
BP
regulation of biological quality
MF
nucleic acid binding
BP
regulation of molecular function
BP
transcription, DNA-templated
BP
regulation of biological process
BP
macromolecule catabolic process
BP
RNA metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.