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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G24500.1
PEP
AT2G24500.1
Position on the Genome Chromosome Chr2
Start Position 10401259
End Position 10402805
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01518376
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger C2H2 superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Cytoplasmic 60S subunit biogenesis factor REI1 homolog 2
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF12171,PF12756
Pfam Description Details
InterPro ID
IPR041661,IPR036236,IPR013087,IPR003604,IPR040025,IPR022755
InterPro Description Details
GO ID
GO:0005634,GO:0042273,GO:0003700,GO:0090070,GO:0009631,GO:0006355,GO:0005737,GO:0008270,GO:0006364,GO:0005829,GO:0003676,GO:0030687
GO Description Details
GOslim ID
GO:0042254,GO:0050896,GO:0003676,GO:0030684,GO:0050789,GO:0006351,GO:0043167,GO:0065009,GO:0006396,GO:0005737,GO:0005634
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT2G24500
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Cytoplasmic 60S subunit biogenesis factor REI1 homolog 2
OrthoDB(1 item)
110732at33090
Zinc finger C2H2 superfamily
Pfam(2 items)
 
Zinc-finger double-stranded RNA-binding
 
C2H2 type zinc-finger (2 copies)
InterPro(6 items)
 
ZN622/Rei1/Reh1_Znf-C2H2
 
Zinc finger C2H2-type
 
Matrin/U1-like-C_Znf_C2H2
 
Znf622/Rei1/Reh1
 
Zinc finger, double-stranded RNA binding
Gene ontology(12 items)
BP
ribosomal large subunit biogenesis
MF
DNA-binding transcription factor activity
BP
positive regulation of ribosome biogenesis
BP
cold acclimation
BP
regulation of transcription, DNA-templated
MF
zinc ion binding
BP
rRNA processing
MF
nucleic acid binding
CC
preribosome, large subunit precursor
GO slim(11 items)
BP
ribosome biogenesis
BP
response to stimulus
MF
nucleic acid binding
BP
regulation of biological process
BP
transcription, DNA-templated
BP
regulation of molecular function
BP
RNA processing

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.