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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G20420.1
PEP
AT2G20420.1
Position on the Genome Chromosome Chr2
Start Position 8805574
End Position 8807858
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00143471
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Succinate--CoA ligase
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial
Accession
CrossRef Refseq from UniProt
NA
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF08442,PF00549
Pfam Description Details
InterPro ID
IPR013815,IPR017866,IPR016102,IPR005811,IPR011761,IPR005809,IPR013650
InterPro Description Details
GO ID
GO:0000287,GO:0004775,GO:0005524,GO:0006099,GO:0005739
GO Description Details
GOslim ID
GO:0005739,GO:0044238,GO:0016874,GO:0043167,GO:0000166,GO:0045333
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial
OrthoDB(1 item)
85438at33090
Succinate--CoA ligase
Pfam(2 items)
 
ATP-grasp domain
 
CoA-ligase
InterPro(7 items)
 
ATP_grasp_subdomain_1
 
Succ-CoA_synthase_bsu_CS
 
Succinyl-CoA_synth-like
 
ATP-citrate lyase/succinyl-CoA ligase
 
Succ_CoA_synthase_bsu
 
ATP-grasp fold, succinyl-CoA synthetase-type
Gene ontology(5 items)
MF
magnesium ion binding
MF
succinate-CoA ligase (ADP-forming) activity
BP
tricarboxylic acid cycle
CC
mitochondrion
GO slim(6 items)
CC
mitochondrion
BP
primary metabolic process
MF
ligase activity
MF
nucleotide binding
BP
cellular respiration

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.