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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G18790.1
PEP
AT2G18790.1
Position on the Genome Chromosome Chr2
Start Position 8140079
End Position 8144151
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00014194
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Phytochrome
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Phytochrome
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00360,PF00512,PF08446,PF00989,PF01590,PF02518
Pfam Description Details
InterPro ID
IPR000014,IPR013515,IPR043150,IPR036890,IPR005467,IPR003594,IPR029016,IPR013654,IPR013516,IPR035965,IPR003661,IPR016132,IPR003018,IPR013767,IPR001294,IPR012129
InterPro Description Details
GO ID
GO:0042803,GO:0009584,GO:0009881,GO:0009585,GO:0017006,GO:0000155,GO:0018298,GO:0006355
GO Description Details
GOslim ID
GO:0005575,GO:0050896,GO:0050789,GO:0006793,GO:0051606,GO:0007154,GO:0006464,GO:0038023,GO:0006351,GO:0005515,GO:0016740
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Phytochrome
OrthoDB(1 item)
3576at33090
Phytochrome
Pfam(6 items)
 
Phytochrome region
 
His Kinase A (phospho-acceptor) domain
 
PAS fold
 
PAS fold
 
GAF domain
 
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
InterPro(16 items)
 
Phytochrome, central region
 
Phytochrome_PHY
 
His_kinase_dom
 
Histidine kinase/HSP90-like ATPase
 
GAF-like_dom_sf
 
Phyto_chromo_BS
 
PAS-like_dom_sf
 
Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
 
Phyto_chromo_attachment
 
Phytochrome_A-E
Gene ontology(8 items)
MF
protein homodimerization activity
BP
detection of visible light
MF
photoreceptor activity
BP
red, far-red light phototransduction
BP
protein-tetrapyrrole linkage
MF
phosphorelay sensor kinase activity
BP
protein-chromophore linkage
BP
regulation of transcription, DNA-templated
GO slim(11 items)
CC
cellular_component
BP
response to stimulus
BP
regulation of biological process
BP
phosphorus metabolic process
BP
detection of stimulus
BP
cell communication
BP
cellular protein modification process
MF
signaling receptor activity
BP
transcription, DNA-templated
MF
protein binding
MF
transferase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.