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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G17450.1
PEP
AT2G17450.1
Position on the Genome Chromosome Chr2
Start Position 7576640
End Position 7577197
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00416881
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger, RING-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Probable E3 ubiquitin-protein ligase ATL44
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF13639
Pfam Description Details
InterPro ID
IPR013083,IPR001841
InterPro Description Details
GO ID
GO:0046872,GO:0051865,GO:0061630,GO:0006513,GO:0016021
GO Description Details
GOslim ID
GO:0043167,GO:0016020,GO:0006464,GO:0019787
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Probable E3 ubiquitin-protein ligase ATL44
OrthoDB(1 item)
197933at33090
Zinc finger, RING-type
Pfam(1 item)
 
Ring finger domain
InterPro(2 items)
 
Znf_RING/FYVE/PHD
 
Zinc finger, RING-type
Gene ontology(5 items)
MF
metal ion binding
BP
protein autoubiquitination
MF
ubiquitin protein ligase activity
BP
protein monoubiquitination
CC
integral component of membrane
GO slim(4 items)
BP
cellular protein modification process
MF
ubiquitin-like protein transferase activity

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.