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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT2G15910.1
PEP
AT2G15910.1
Position on the Genome Chromosome Chr2
Start Position 6932917
End Position 6935333
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI02033605
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Expp1 protein
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
CSL zinc finger domain-containing protein
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF05207
Pfam Description Details
InterPro ID
IPR036671,IPR007872
InterPro Description Details
GO ID
GO:0005634,GO:0046872,GO:0005829,GO:0002098,GO:0017183
GO Description Details
GOslim ID
GO:0043412,GO:0006396,GO:0050789,GO:0043167,GO:0005634,GO:0006464,GO:0005737
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
CSL zinc finger domain-containing protein
OrthoDB(1 item)
185101at33090
Expp1 protein
Pfam(1 item)
 
CSL zinc finger
InterPro(2 items)
 
Zinc finger, DPH-type
Gene ontology(5 items)
MF
metal ion binding
BP
tRNA wobble uridine modification
BP
peptidyl-diphthamide biosynthetic process from peptidyl-histidine
GO slim(7 items)
BP
macromolecule modification
BP
RNA processing
BP
regulation of biological process
BP
cellular protein modification process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.