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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G80750.1
PEP
AT1G80750.1
Position on the Genome Chromosome Chr1
Start Position 30349052
End Position 30350434
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00294049
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Ribosomal protein L30, ferredoxin-like fold domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
60S ribosomal protein L7-1
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF08079,PF00327
Pfam Description Details
InterPro ID
IPR005998,IPR039699,IPR023106,IPR016082,IPR035808,IPR036919,IPR012988
InterPro Description Details
GO ID
GO:0003735,GO:0022625,GO:0000463,GO:0005829,GO:0005730,GO:0003723
GO Description Details
GOslim ID
GO:0006396,GO:0005198,GO:0005737,GO:0005730,GO:0005840,GO:1990904,GO:0042254,GO:0003676
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G80750
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
60S ribosomal protein L7-1
OrthoDB(1 item)
175868at33090
Ribosomal protein L30, ferredoxin-like fold domain
Pfam(2 items)
 
Ribosomal L30 N-terminal domain
 
Ribosomal protein L30p/L7e
InterPro(7 items)
 
Ribosomal_L7_euk
 
Ribosomal_L7/L30
 
Ribosomal_L30_central_dom_arc
 
Ribosomal protein L30, ferredoxin-like fold domain
 
Ribosomal_L7_euk_arc
 
L30_ferredoxin-like_sf
 
Ribosomal protein L30, N-terminal
Gene ontology(6 items)
MF
structural constituent of ribosome
CC
cytosolic large ribosomal subunit
BP
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO slim(8 items)
BP
RNA processing
MF
structural molecule activity
CC
ribonucleoprotein complex
BP
ribosome biogenesis
MF
nucleic acid binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.