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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G79650.4
PEP
AT1G79650.4
Position on the Genome Chromosome Chr1
Start Position 29972406
End Position 29975132
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01449941
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Ubiquitin domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Ubiquitin receptor RAD23
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00627,PF09280,PF00240
Pfam Description Details
InterPro ID
IPR006636,IPR009060,IPR036353,IPR015360,IPR004806,IPR015940,IPR000626,IPR029071
InterPro Description Details
GO ID
GO:0003684,GO:0005829,GO:0043130,GO:0070628,GO:0005634,GO:0031593,GO:0043161,GO:0005654,GO:0006289
GO Description Details
GOslim ID
GO:0005737,GO:0005634,GO:0005488,GO:0009057,GO:0006281,GO:0005515,GO:0003676,GO:0006508
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Ubiquitin receptor RAD23
OrthoDB(1 item)
195520at33090
Ubiquitin domain
Pfam(3 items)
 
UBA/TS-N domain
 
XPC-binding domain
 
Ubiquitin family
InterPro(8 items)
 
XPC-binding domain
 
Ubiquitin-associated domain
 
Ubiquitin domain
 
Ubiquitin-like_domsf
Gene ontology(9 items)
MF
damaged DNA binding
MF
ubiquitin binding
MF
proteasome binding
MF
polyubiquitin modification-dependent protein binding
BP
proteasome-mediated ubiquitin-dependent protein catabolic process
BP
nucleotide-excision repair
GO slim(8 items)
BP
macromolecule catabolic process
MF
protein binding
MF
nucleic acid binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.