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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G78010.1
PEP
AT1G78010.1
Position on the Genome Chromosome Chr1
Start Position 29333535
End Position 29336297
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI03334872
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
GTP binding domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Uncharacterized protein
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF12631,PF01926,PF10396
Pfam Description Details
InterPro ID
IPR031168,IPR027417,IPR025867,IPR018948,IPR004520,IPR027368,IPR006073,IPR027266,IPR005225
InterPro Description Details
GO ID
GO:0005525,GO:0006400,GO:0003924
GO Description Details
GOslim ID
GO:0000166,GO:0001882,GO:0043167,GO:0043412,GO:0016787,GO:0006396
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Uncharacterized protein
OrthoDB(1 item)
148539at33090
GTP binding domain
Pfam(3 items)
 
MnmE helical domain
 
50S ribosome-binding GTPase
 
GTP-binding protein TrmE N-terminus
InterPro(9 items)
 
P-loop_NTPase
 
MnmE, helical domain
 
GTP-binding protein TrmE, N-terminal
 
GTP binding domain
 
TrmE/GcvT_dom1
 
Small_GTP-bd_dom
Gene ontology(3 items)
BP
tRNA modification
MF
GTPase activity
GO slim(6 items)
MF
nucleotide binding
MF
nucleoside binding
BP
macromolecule modification
MF
hydrolase activity
BP
RNA processing

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.