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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G76580.1
PEP
AT1G76580.1
Position on the Genome Chromosome Chr1
Start Position 28734600
End Position 28738451
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00394664
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
SBP domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF03110
Pfam Description Details
InterPro ID
IPR004333,IPR036893,IPR036770
InterPro Description Details
GO ID
GO:0003677,GO:0005634
GO Description Details
GOslim ID
GO:0005634,GO:0003676
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
OrthoDB(1 item)
12934at33090
SBP domain
Pfam(1 item)
 
SBP domain
InterPro(3 items)
 
Ankyrin_rpt-contain_sf
Gene ontology(2 items)
GO slim(2 items)
MF
nucleic acid binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.