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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G75200.1
PEP
AT1G75200.1
Position on the Genome Chromosome Chr1
Start Position 28220849
End Position 28223597
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00319314
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Radical SAM
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF04055,PF08608,PF00258
Pfam Description Details
InterPro ID
IPR007197,IPR013785,IPR029039,IPR008254,IPR034556,IPR001094,IPR013917
InterPro Description Details
GO ID
GO:0051539,GO:0010181,GO:0102521,GO:0031591,GO:0005739,GO:0046872,GO:0055114
GO Description Details
GOslim ID
GO:0043412,GO:0043167,GO:0005739,GO:0000166,GO:0051540,GO:0055114,GO:0016829,GO:0006396
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G75200
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase
OrthoDB(1 item)
98362at33090
Radical SAM
Pfam(3 items)
 
Radical SAM superfamily
 
Wyosine base formation
 
Flavodoxin
InterPro(7 items)
 
Flavoprotein-like_sf
 
Flavodoxin/nitric oxide synthase
 
tRNA_wybutosine-synthase
 
Flavdoxin-like
 
tRNA wybutosine-synthesis
Gene ontology(7 items)
MF
4 iron, 4 sulfur cluster binding
MF
tRNA-4-demethylwyosine synthase activity
BP
wybutosine biosynthetic process
CC
mitochondrion
MF
metal ion binding
BP
obsolete oxidation-reduction process
GO slim(8 items)
BP
macromolecule modification
CC
mitochondrion
MF
nucleotide binding
MF
metal cluster binding
BP
oxidation-reduction process
MF
lyase activity
BP
RNA processing

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.