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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G74410.1
PEP
AT1G74410.1
Position on the Genome Chromosome Chr1
Start Position 27965723
End Position 27967681
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00636753
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger, RING-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
NEP1-interacting protein-like 2
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF13639
Pfam Description Details
InterPro ID
IPR013083,IPR001841
InterPro Description Details
GO ID
GO:0016021,GO:0046872,GO:0010200,GO:0006952
GO Description Details
GOslim ID
GO:0050896,GO:0016020,GO:0043167
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
NEP1-interacting protein-like 2
OrthoDB(1 item)
169491at33090
Zinc finger, RING-type
Pfam(1 item)
 
Ring finger domain
InterPro(2 items)
 
Znf_RING/FYVE/PHD
 
Zinc finger, RING-type
Gene ontology(4 items)
CC
integral component of membrane
MF
metal ion binding
BP
response to chitin
BP
defense response
GO slim(3 items)
BP
response to stimulus

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.