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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G72320.1
PEP
AT1G72320.1
Position on the Genome Chromosome Chr1
Start Position 27228984
End Position 27232580
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00113176
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Pumilio RNA-binding repeat
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Pumilio homolog 23
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00806
Pfam Description Details
InterPro ID
IPR040000,IPR011989,IPR016024,IPR001313
InterPro Description Details
GO ID
GO:0030686,GO:0000056,GO:0005730,GO:0010252,GO:0030688,GO:0003723,GO:0000447,GO:0009744,GO:0000472,GO:0009749,GO:0000480,GO:0006417
GO Description Details
GOslim ID
GO:0030684,GO:0042254,GO:0065008,GO:0015031,GO:0003676,GO:0005730,GO:0006396,GO:0005575,GO:0015931,GO:0051640,GO:0050789,GO:0050896
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G72320
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Pumilio homolog 23
OrthoDB(1 item)
23444at33090
Pumilio RNA-binding repeat
Pfam(1 item)
 
Pumilio-family RNA binding repeat
InterPro(4 items)
 
ARM-type_fold
 
Pumilio RNA-binding repeat
Gene ontology(12 items)
CC
90S preribosome
BP
ribosomal small subunit export from nucleus
BP
auxin homeostasis
CC
preribosome, small subunit precursor
BP
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BP
response to sucrose
BP
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BP
response to glucose
BP
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BP
regulation of translation
GO slim(12 items)
BP
ribosome biogenesis
BP
regulation of biological quality
BP
protein transport
MF
nucleic acid binding
BP
RNA processing
CC
cellular_component
BP
nucleobase-containing compound transport
BP
organelle localization
BP
regulation of biological process
BP
response to stimulus

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.