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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G71800.1
PEP
AT1G71800.1
Position on the Genome Chromosome Chr1
Start Position 26999606
End Position 27001850
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00469517
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
RNA recognition motif domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
CSTF64
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF14304,PF14327,PF00076
Pfam Description Details
InterPro ID
IPR025742,IPR012677,IPR035979,IPR026896,IPR000504
InterPro Description Details
GO ID
GO:0003723,GO:0005634,GO:0031124
GO Description Details
GOslim ID
GO:0003676,GO:0006396,GO:0005634
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
OrthoDB(1 item)
72227at33090
RNA recognition motif domain
Pfam(3 items)
 
Transcription termination and cleavage factor C-terminal
 
Hinge domain of cleavage stimulation factor subunit 2
 
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
InterPro(5 items)
 
Cleavage stimulation factor subunit 2, hinge domain
 
Nucleotide-bd_a/b_plait_sf
 
RBD_domain_sf
 
Transcription termination and cleavage factor, C-terminal domain
 
RNA recognition motif domain
Gene ontology(3 items)
BP
mRNA 3'-end processing
GO slim(3 items)
MF
nucleic acid binding
BP
RNA processing

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.