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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G70170.1
PEP
AT1G70170.1
Position on the Genome Chromosome Chr1
Start Position 26424005
End Position 26425141
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00687739
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Peptidase M10A
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Metalloendoproteinase 2-MMP
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF01471,PF00413
Pfam Description Details
InterPro ID
IPR006026,IPR021190,IPR033739,IPR001818,IPR002477,IPR021158,IPR036365,IPR024079
InterPro Description Details
GO ID
GO:0046686,GO:0004222,GO:0007275,GO:0009651,GO:0030574,GO:0031225,GO:0030198,GO:0080186,GO:0008270,GO:0031012,GO:2000028,GO:1900056,GO:0009753,GO:0005886
GO Description Details
GOslim ID
GO:0032502,GO:0050896,GO:0032501,GO:0050789,GO:0031012,GO:0008152,GO:0016020,GO:0000003,GO:0043167,GO:0040007,GO:0008233,GO:0043062
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Metalloendoproteinase 2-MMP
OrthoDB(1 item)
91741at33090
Peptidase M10A
Pfam(2 items)
 
Putative peptidoglycan binding domain
 
Matrixin
InterPro(8 items)
 
Peptidase_Metallo
 
Peptidase M10, metallopeptidase
 
Peptidoglycan binding-like
 
Pept_M10A_Zn_BS
 
MetalloPept_cat_dom_sf
Gene ontology(14 items)
BP
response to cadmium ion
MF
metalloendopeptidase activity
BP
multicellular organism development
BP
response to salt stress
BP
collagen catabolic process
CC
anchored component of membrane
BP
extracellular matrix organization
BP
developmental vegetative growth
MF
zinc ion binding
CC
extracellular matrix
BP
regulation of photoperiodism, flowering
BP
negative regulation of leaf senescence
BP
response to jasmonic acid
CC
plasma membrane
GO slim(12 items)
BP
developmental process
BP
response to stimulus
BP
multicellular organismal process
BP
regulation of biological process
CC
extracellular matrix
BP
metabolic process
MF
peptidase activity
BP
extracellular structure organization

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.