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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G69770.1
PEP
AT1G69770.1
Position on the Genome Chromosome Chr1
Start Position 26248496
End Position 26253519
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00121622
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Chromo domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Cytosine-specific methyltransferase
Accession
CrossRef Refseq from UniProt
NA
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF01426,PF00145,PF00385
Pfam Description Details
InterPro ID
IPR029063,IPR018117,IPR001025,IPR001525,IPR016197,IPR023780,IPR023779,IPR043151,IPR000953
InterPro Description Details
GO ID
GO:0006325,GO:0003682,GO:0003677,GO:0003886,GO:0005634
GO Description Details
GOslim ID
GO:0006304,GO:0003682,GO:0003676,GO:0005634,GO:0016740,GO:0051276
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Cytosine-specific methyltransferase
OrthoDB(1 item)
33778at33090
Chromo domain
Pfam(3 items)
 
BAH domain
 
C-5 cytosine-specific DNA methylase
 
Chromo (CHRromatin Organisation MOdifier) domain
InterPro(9 items)
 
SAM-dependent_MTases
 
C5_DNA_meth_AS
 
Bromo adjacent homology (BAH) domain
 
C-5 cytosine methyltransferase
 
Chromo-like_dom_sf
 
Chromo domain
 
Chromodomain_CS
 
Chromo/chromo_shadow_dom
Gene ontology(5 items)
BP
chromatin organization
MF
chromatin binding
MF
DNA (cytosine-5-)-methyltransferase activity
GO slim(6 items)
BP
DNA modification
MF
chromatin binding
MF
nucleic acid binding
MF
transferase activity
BP
chromosome organization

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.