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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G65070.2
PEP
AT1G65070.2
Position on the Genome Chromosome Chr1
Start Position 24173047
End Position 24176244
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01388800
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
DNA mismatch repair protein MutS, core
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
DNA mismatch repair protein MutS, type 2
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00488
Pfam Description Details
InterPro ID
IPR027417,IPR002625,IPR036187,IPR007696,IPR000432,IPR005747,IPR036063
InterPro Description Details
GO ID
GO:0030983,GO:0016887,GO:0005524,GO:0045910,GO:0006298,GO:0004519
GO Description Details
GOslim ID
GO:0000166,GO:0043170,GO:0050789,GO:0016787,GO:0003676,GO:0006259,GO:0006281,GO:0043167,GO:0006139
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
DNA mismatch repair protein MutS, type 2
OrthoDB(1 item)
172008at33090
DNA mismatch repair protein MutS, core
Pfam(1 item)
 
MutS domain V
InterPro(7 items)
 
P-loop_NTPase
 
DNA_mismatch_repair_MutS_sf
 
DNA mismatch repair protein MutS, core
 
DNA mismatch repair protein MutS, C-terminal
Gene ontology(6 items)
MF
mismatched DNA binding
MF
ATPase activity
BP
negative regulation of DNA recombination
BP
mismatch repair
MF
endonuclease activity
GO slim(9 items)
MF
nucleotide binding
BP
macromolecule metabolic process
BP
regulation of biological process
MF
hydrolase activity
MF
nucleic acid binding
BP
DNA metabolic process
BP
nucleobase-containing compound metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.