Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G63100.2
PEP
AT1G63100.2
Position on the Genome Chromosome Chr1
Start Position 23399391
End Position 23401367
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00403533
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Transcription factor GRAS
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Scarecrow-like protein 28
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF03514
Pfam Description Details
InterPro ID
IPR030027,IPR005202
InterPro Description Details
GO ID
GO:0006355,GO:0043565,GO:0003700,GO:0005634
GO Description Details
GOslim ID
GO:0065009,GO:0003676,GO:0050789,GO:0005634,GO:0006351
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
GRAS family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Scarecrow-like protein 28
OrthoDB(1 item)
83286at33090
Transcription factor GRAS
Pfam(1 item)
 
GRAS domain family
InterPro(2 items)
 
Scarecrow-like_28
 
Transcription factor GRAS
Gene ontology(4 items)
BP
regulation of transcription, DNA-templated
MF
sequence-specific DNA binding
MF
DNA-binding transcription factor activity
GO slim(5 items)
BP
regulation of molecular function
MF
nucleic acid binding
BP
regulation of biological process
BP
transcription, DNA-templated

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.