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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G58470.1
PEP
AT1G58470.1
Position on the Genome Chromosome Chr1
Start Position 21727374
End Position 21728539
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00405746
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
RNA-binding domain superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
RNA-binding protein 1
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00076
Pfam Description Details
InterPro ID
IPR035979,IPR012677,IPR037366,IPR000504
InterPro Description Details
GO ID
GO:0003729,GO:0003727
GO Description Details
GOslim ID
GO:0003676
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G58470
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
RNA-binding protein 1
OrthoDB(1 item)
191429at33090
RNA-binding domain superfamily
Pfam(1 item)
 
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
InterPro(4 items)
 
RBD_domain_sf
 
Nucleotide-bd_a/b_plait_sf
 
RNA recognition motif domain
Gene ontology(2 items)
MF
single-stranded RNA binding
GO slim(1 item)
MF
nucleic acid binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.