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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G56560.1
PEP
AT1G56560.1
Position on the Genome Chromosome Chr1
Start Position 21192593
End Position 21194948
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00174396
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Six-hairpin glycosidase-like superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Alkaline/neutral invertase
Accession
CrossRef Refseq from UniProt
NA
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF12899
Pfam Description Details
InterPro ID
IPR012341,IPR024746,IPR008928
InterPro Description Details
GO ID
GO:0005987,GO:0033926,GO:0004575
GO Description Details
GOslim ID
GO:0016787,GO:0005975
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Alkaline/neutral invertase
OrthoDB(1 item)
38052at33090
Six-hairpin glycosidase-like superfamily
Pfam(1 item)
 
Alkaline and neutral invertase
InterPro(3 items)
 
6hp_glycosidase-like_sf
 
Glycosyl hydrolase family 100
 
6-hairpin_glycosidase_sf
Gene ontology(3 items)
BP
sucrose catabolic process
MF
glycopeptide alpha-N-acetylgalactosaminidase activity
MF
sucrose alpha-glucosidase activity
GO slim(2 items)
MF
hydrolase activity
BP
carbohydrate metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.