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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G55110.1
PEP
AT1G55110.1
Position on the Genome Chromosome Chr1
Start Position 20560406
End Position 20562625
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00163628
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger C2H2 superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Protein indeterminate-domain 7
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF12171
Pfam Description Details
InterPro ID
IPR036236,IPR013087,IPR022755
InterPro Description Details
GO ID
GO:0005634,GO:0003677,GO:0006355,GO:0003700,GO:0046872
GO Description Details
GOslim ID
GO:0003676,GO:0005634,GO:0050789,GO:0043167,GO:0006351,GO:0065009
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
C2H2 family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Protein indeterminate-domain 7
OrthoDB(1 item)
67738at33090
Zinc finger C2H2 superfamily
Pfam(1 item)
 
Zinc-finger double-stranded RNA-binding
InterPro(3 items)
 
Zinc finger C2H2-type
 
Zinc finger, double-stranded RNA binding
Gene ontology(5 items)
BP
regulation of transcription, DNA-templated
MF
DNA-binding transcription factor activity
MF
metal ion binding
GO slim(6 items)
MF
nucleic acid binding
BP
regulation of biological process
BP
transcription, DNA-templated
BP
regulation of molecular function

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.