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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G53320.1
PEP
AT1G53320.1
Position on the Genome Chromosome Chr1
Start Position 19891237
End Position 19893429
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00687566
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Tubby, C-terminal
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Tubby-like F-box protein 7
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00646,PF01167
Pfam Description Details
InterPro ID
IPR000007,IPR001810,IPR025659,IPR018066
InterPro Description Details
GO ID
GO:0005829,GO:0005634,GO:0009555,GO:0009620,GO:0009536,GO:0006355,GO:0003700,GO:0005886
GO Description Details
GOslim ID
GO:0005737,GO:0009536,GO:0006351,GO:0050789,GO:0065009,GO:0003676,GO:0016020,GO:0050896,GO:0032502,GO:0005634,GO:0032501,GO:0044419
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Tubby-like F-box protein 7
OrthoDB(1 item)
124883at33090
Tubby, C-terminal
Pfam(2 items)
 
F-box domain
 
Tub family
InterPro(4 items)
 
Tubby, C-terminal
Gene ontology(8 items)
BP
pollen development
BP
response to fungus
BP
regulation of transcription, DNA-templated
MF
DNA-binding transcription factor activity
CC
plasma membrane
GO slim(12 items)
BP
transcription, DNA-templated
BP
regulation of biological process
BP
regulation of molecular function
MF
nucleic acid binding
BP
response to stimulus
BP
developmental process
BP
multicellular organismal process
BP
interspecies interaction between organisms

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.