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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G53080.1
PEP
AT1G53080.1
Position on the Genome Chromosome Chr1
Start Position 19781368
End Position 19782219
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00635953
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Legume lectin domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Lectin-like protein At1g53080
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00139
Pfam Description Details
InterPro ID
IPR001220,IPR016363,IPR013320
InterPro Description Details
GO ID
GO:0048046,GO:0005634,GO:0030246
GO Description Details
GOslim ID
GO:0030246,GO:0005634,GO:0005576
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Lectin-like protein At1g53080
OrthoDB(1 item)
143505at33090
Legume lectin domain
Pfam(1 item)
 
Legume lectin domain
InterPro(3 items)
 
Legume lectin domain
 
ConA-like_dom_sf
Gene ontology(3 items)
MF
carbohydrate binding
GO slim(3 items)
MF
carbohydrate binding
CC
extracellular region

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.