Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G52160.1
PEP
AT1G52160.1
Position on the Genome Chromosome Chr1
Start Position 19420911
End Position 19424419
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00499295
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
tRNase Z endonuclease
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Ribonuclease Z
Accession
CrossRef Refseq from UniProt
NA
EC
KEGG entry
NA
KO ID
NA
Pfam ID
PF13691
Pfam Description Details
InterPro ID
IPR036866,IPR027794,IPR013471
InterPro Description Details
GO ID
GO:0046872,GO:0016891,GO:0042779
GO Description Details
GOslim ID
GO:0016787,GO:0016070,GO:0043167,GO:0006396
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Ribonuclease Z
OrthoDB(1 item)
130851at33090
tRNase Z endonuclease
Pfam(1 item)
 
tRNase Z endonuclease
InterPro(3 items)
 
RibonucZ/Hydroxyglut_hydro
 
tRNase Z endonuclease
Gene ontology(3 items)
MF
metal ion binding
MF
endoribonuclease activity, producing 5'-phosphomonoesters
BP
tRNA 3'-trailer cleavage
GO slim(4 items)
MF
hydrolase activity
BP
RNA metabolic process
BP
RNA processing

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.