Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G51310.1
PEP
AT1G51310.1
Position on the Genome Chromosome Chr1
Start Position 19019185
End Position 19021735
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00360406
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
tRNA-specific 2-thiouridylase
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
tRNA-5-taurinomethyluridine 2-sulfurtransferase
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
NA
Pfam Description
InterPro ID
IPR023382,IPR004506,IPR014729
InterPro Description Details
GO ID
GO:0008033,GO:0000049,GO:0016783,GO:0005524,GO:0008168,GO:0032259
GO Description Details
GOslim ID
GO:0003676,GO:0016740,GO:0006396,GO:0000166,GO:0043167,GO:0008152
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G51310
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
tRNA-5-taurinomethyluridine 2-sulfurtransferase
OrthoDB(1 item)
142199at33090
tRNA-specific 2-thiouridylase
InterPro(3 items)
 
Adenine_a_hdrlase_dom
 
tRNA-specific_2-thiouridylase
 
Rossmann-like_a/b/a_fold
Gene ontology(6 items)
BP
tRNA processing
MF
sulfurtransferase activity
MF
methyltransferase activity
GO slim(6 items)
MF
nucleic acid binding
MF
transferase activity
BP
RNA processing
MF
nucleotide binding
BP
metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.