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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G50600.2
PEP
AT1G50600.2
Position on the Genome Chromosome Chr1
Start Position 18737398
End Position 18739559
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00139493
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Transcription factor GRAS
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Scarecrow-like protein 5
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF03514
Pfam Description Details
InterPro ID
IPR005202
InterPro Description Details
GO ID
GO:0005634,GO:0006355,GO:0003700,GO:0005829,GO:0043565
GO Description Details
GOslim ID
GO:0005634,GO:0050789,GO:0005737,GO:0006351,GO:0003676,GO:0065009
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
GRAS family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Scarecrow-like protein 5
OrthoDB(1 item)
44942at33090
Transcription factor GRAS
Pfam(1 item)
 
GRAS domain family
InterPro(1 item)
 
Transcription factor GRAS
Gene ontology(5 items)
BP
regulation of transcription, DNA-templated
MF
DNA-binding transcription factor activity
MF
sequence-specific DNA binding
GO slim(6 items)
BP
regulation of biological process
BP
transcription, DNA-templated
MF
nucleic acid binding
BP
regulation of molecular function

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.