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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G47870.1
PEP
AT1G47870.1
Position on the Genome Chromosome Chr1
Start Position 17634937
End Position 17637557
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00060592
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Winged helix-like DNA-binding domain superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Winged-helix DNA-binding transcription factor family protein
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF02319,PF16421
Pfam Description Details
InterPro ID
IPR032198,IPR036388,IPR015633,IPR037241,IPR003316,IPR036390
InterPro Description Details
GO ID
GO:0005667,GO:0003700,GO:0003677,GO:0046983,GO:0005634
GO Description Details
GOslim ID
GO:0005667,GO:0006351,GO:0003676,GO:0005634,GO:0005515,GO:0065009,GO:0050789
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
E2F/DP family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Winged-helix DNA-binding transcription factor family protein
OrthoDB(1 item)
100842at33090
Winged helix-like DNA-binding domain superfamily
Pfam(2 items)
 
E2F/DP family winged-helix DNA-binding domain
 
E2F transcription factor CC-MB domain
InterPro(6 items)
 
E2F transcription factor, CC-MB domain
 
WH-like_DNA-bd_sf
 
E2F-DP_heterodim
 
E2F/DP family, winged-helix DNA-binding domain
Gene ontology(5 items)
CC
transcription regulator complex
MF
DNA-binding transcription factor activity
MF
protein dimerization activity
GO slim(7 items)
CC
transcription regulator complex
BP
transcription, DNA-templated
MF
nucleic acid binding
MF
protein binding
BP
regulation of molecular function
BP
regulation of biological process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.