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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G36370.1
PEP
AT1G36370.1
Position on the Genome Chromosome Chr1
Start Position 13696240
End Position 13698576
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00657697
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Pyridoxal phosphate-dependent transferase
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Serine hydroxymethyltransferase 7
Accession
CrossRef Refseq from UniProt
EC
KEGG entry
KO ID
NA
Pfam ID
PF00464
Pfam Description Details
InterPro ID
IPR019798,IPR001085,IPR039429,IPR015422,IPR015421,IPR015424
InterPro Description Details
GO ID
GO:0019264,GO:0008270,GO:0005737,GO:0016597,GO:0050897,GO:0004372,GO:0046500,GO:0030170,GO:1904482,GO:0006730,GO:0006544,GO:0070905,GO:0046655,GO:0006565,GO:0005634,GO:0046686,GO:0055063,GO:0035999,GO:0046653,GO:0044030
GO Description Details
GOslim ID
GO:0043167,GO:0050896,GO:0006082,GO:0006520,GO:0006725,GO:0006730,GO:0046483,GO:0006766,GO:0065008,GO:0043603,GO:0005737,GO:0050789,GO:0016597,GO:0016740,GO:0006304,GO:0019842,GO:0006790,GO:0005634
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G36370
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(2 items)
 
Serine hydroxymethyltransferase 7
OrthoDB(1 item)
44290at33090
Pyridoxal phosphate-dependent transferase
Pfam(1 item)
 
Serine hydroxymethyltransferase
InterPro(6 items)
 
Ser_HO-MeTrfase_PLP_BS
 
Ser_HO-MeTrfase
 
Serine hydroxymethyltransferase-like domain
 
PyrdxlP-dep_Trfase_dom1
 
PyrdxlP-dep_Trfase_major
 
PyrdxlP-dep_Trfase
Gene ontology(20 items)
BP
glycine biosynthetic process from serine
MF
zinc ion binding
MF
amino acid binding
MF
cobalt ion binding
MF
glycine hydroxymethyltransferase activity
BP
S-adenosylmethionine metabolic process
MF
pyridoxal phosphate binding
BP
cellular response to tetrahydrofolate
BP
one-carbon metabolic process
BP
glycine metabolic process
MF
serine binding
BP
folic acid metabolic process
BP
L-serine catabolic process
BP
response to cadmium ion
BP
sulfate ion homeostasis
BP
tetrahydrofolate interconversion
BP
tetrahydrofolate metabolic process
BP
regulation of DNA methylation
GO slim(18 items)
BP
response to stimulus
BP
organic acid metabolic process
BP
cellular amino acid metabolic process
BP
cellular aromatic compound metabolic process
BP
one-carbon metabolic process
BP
heterocycle metabolic process
BP
vitamin metabolic process
BP
regulation of biological quality
BP
cellular amide metabolic process
BP
regulation of biological process
MF
amino acid binding
MF
transferase activity
BP
DNA modification
MF
vitamin binding
BP
sulfur compound metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.