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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G28300.1
PEP
AT1G28300.1
Position on the Genome Chromosome Chr1
Start Position 9897054
End Position 9899838
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01505738
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
B3 DNA binding domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
B3 domain-containing transcription factor LEC2
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF02362
Pfam Description Details
InterPro ID
IPR015300,IPR003340
InterPro Description Details
GO ID
GO:0010431,GO:0003677,GO:0045893,GO:0003700,GO:0005634,GO:0009793,GO:0010344,GO:0010601,GO:0010262
GO Description Details
GOslim ID
GO:0006351,GO:0003676,GO:0032502,GO:0032501,GO:0005634,GO:0065009,GO:0000003,GO:0042445,GO:0050789,GO:0044085
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
B3 family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
B3 domain-containing transcription factor LEC2
OrthoDB(1 item)
196845at33090
B3 DNA binding domain
Pfam(1 item)
 
B3 DNA binding domain
InterPro(2 items)
 
DNA-bd_pseudobarrel_sf
 
B3 DNA binding domain
Gene ontology(9 items)
BP
seed maturation
BP
positive regulation of transcription, DNA-templated
MF
DNA-binding transcription factor activity
BP
embryo development ending in seed dormancy
BP
seed oilbody biogenesis
BP
positive regulation of auxin biosynthetic process
BP
somatic embryogenesis
GO slim(10 items)
BP
transcription, DNA-templated
MF
nucleic acid binding
BP
developmental process
BP
multicellular organismal process
BP
regulation of molecular function
BP
hormone metabolic process
BP
regulation of biological process
BP
cellular component biogenesis

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.