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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G22510.2
PEP
AT1G22510.2
Position on the Genome Chromosome Chr1
Start Position 7951003
End Position 7952593
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00662558
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Zinc finger, RING-type
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232)
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF06803
Pfam Description Details
InterPro ID
IPR010652
InterPro Description Details
GO ID
GO:0005886,GO:0016021,GO:0005783,GO:0005634,GO:0005774
GO Description Details
GOslim ID
GO:0016020,GO:0005773,GO:0005783,GO:0005634
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G22510
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232)
OrthoDB(1 item)
186468at33090
Zinc finger, RING-type
Pfam(1 item)
 
Protein of unknown function (DUF1232)
InterPro(1 item)
 
Domain of unknown function DUF1232
Gene ontology(5 items)
CC
plasma membrane
CC
integral component of membrane
CC
endoplasmic reticulum
CC
vacuolar membrane
GO slim(4 items)
CC
endoplasmic reticulum

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.