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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G21651.1
PEP
AT1G21651.1
Position on the Genome Chromosome Chr1
Start Position 7601061
End Position 7604152
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00588620
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
SecA, preprotein cross-linking domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Putative SecA-type chloroplast protein transport factor
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF13445,PF00400
Pfam Description Details
InterPro ID
IPR011009,IPR036322,IPR017986,IPR013083,IPR001680,IPR015943,IPR001841,IPR020472,IPR027370
InterPro Description Details
GO ID
GO:0046872
GO Description Details
GOslim ID
GO:0043167
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Putative SecA-type chloroplast protein transport factor
OrthoDB(1 item)
6937at33090
SecA, preprotein cross-linking domain
Pfam(2 items)
 
RING-type zinc-finger
 
WD domain, G-beta repeat
InterPro(9 items)
 
Kinase-like_dom_sf
 
WD40_repeat_dom_sf
 
WD40_repeat_dom
 
Znf_RING/FYVE/PHD
 
WD40/YVTN_repeat-like_dom_sf
 
Zinc finger, RING-type
 
G-protein_beta_WD-40_rep
 
RING-type zinc-finger, LisH dimerisation motif
Gene ontology(1 item)
MF
metal ion binding
GO slim(1 item)

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.