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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G19850.1
PEP
AT1G19850.1
Position on the Genome Chromosome Chr1
Start Position 6887353
End Position 6891182
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00652270
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Auxin response factor
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Auxin response factor 5
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF02309,PF06507,PF02362
Pfam Description Details
InterPro ID
IPR000270,IPR033389,IPR010525,IPR015300,IPR003340
InterPro Description Details
GO ID
GO:0042802,GO:0048507,GO:0048364,GO:0009734,GO:0009793,GO:0010305,GO:0010051,GO:0005634,GO:0003700,GO:0009908,GO:0003677,GO:0009942,GO:0006355,GO:0009733
GO Description Details
GOslim ID
GO:0050789,GO:0032502,GO:0032501,GO:0065009,GO:0050896,GO:0005634,GO:0003676,GO:0006351,GO:0000003,GO:0007154,GO:0005515
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
ARF family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G19850
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Auxin response factor 5
OrthoDB(1 item)
10680at33090
Auxin response factor
Pfam(3 items)
 
AUX/IAA family
 
Auxin response factor
 
B3 DNA binding domain
InterPro(5 items)
 
AUX/IAA domain
 
Auxin response factor
 
DNA-bd_pseudobarrel_sf
 
B3 DNA binding domain
Gene ontology(14 items)
MF
identical protein binding
BP
meristem development
BP
root development
BP
auxin-activated signaling pathway
BP
embryo development ending in seed dormancy
BP
leaf vascular tissue pattern formation
BP
xylem and phloem pattern formation
MF
DNA-binding transcription factor activity
BP
flower development
BP
longitudinal axis specification
BP
regulation of transcription, DNA-templated
BP
response to auxin
GO slim(11 items)
BP
regulation of biological process
BP
developmental process
BP
multicellular organismal process
BP
regulation of molecular function
BP
response to stimulus
MF
nucleic acid binding
BP
transcription, DNA-templated
BP
cell communication
MF
protein binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.