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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G19485.1
PEP
AT1G19485.1
Position on the Genome Chromosome Chr1
Start Position 6747167
End Position 6751443
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00185934
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
WD40/YVTN repeat-like-containing domain superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Uncharacterized protein
Accession
CrossRef Refseq from UniProt
NA
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF02178
Pfam Description Details
InterPro ID
IPR001680,IPR000637,IPR036322,IPR015943,IPR017956
InterPro Description Details
GO ID
GO:0003677,GO:0006355,GO:0005634
GO Description Details
GOslim ID
GO:0003676,GO:0050789,GO:0005634,GO:0006351
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Uncharacterized protein
OrthoDB(1 item)
8255at33090
WD40/YVTN repeat-like-containing domain superfamily
Pfam(1 item)
 
AT hook motif
InterPro(5 items)
 
HMGI/Y_DNA-bd_CS
 
WD40_repeat_dom_sf
 
WD40/YVTN_repeat-like_dom_sf
 
AT hook, DNA-binding motif
Gene ontology(3 items)
BP
regulation of transcription, DNA-templated
GO slim(4 items)
MF
nucleic acid binding
BP
regulation of biological process
BP
transcription, DNA-templated

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.