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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G17920.1
PEP
AT1G17920.1
Position on the Genome Chromosome Chr1
Start Position 6162214
End Position 6165033
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00388672
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Homeobox domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Homeobox-leucine zipper protein HDG12
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00046,PF01852
Pfam Description Details
InterPro ID
IPR001356,IPR023393,IPR042160,IPR002913,IPR009057,IPR017970
InterPro Description Details
GO ID
GO:0048497,GO:0005634,GO:0003700,GO:0010091,GO:0008289,GO:0003677,GO:0000981
GO Description Details
GOslim ID
GO:0032501,GO:0006351,GO:0003676,GO:0050789,GO:0032502,GO:0005634,GO:0005694,GO:0000003,GO:0065009,GO:0008289
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
HD-ZIP family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G17920
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Homeobox-leucine zipper protein HDG12
OrthoDB(1 item)
23185at33090
Homeobox domain
Pfam(2 items)
 
Homeobox domain
 
START domain
InterPro(6 items)
 
Homeobox domain
 
START-like_dom_sf
 
GLABRA2/ANL2/PDF2/ATML1-like
 
Homeobox-like_sf
Gene ontology(7 items)
BP
maintenance of floral organ identity
MF
DNA-binding transcription factor activity
BP
trichome branching
MF
lipid binding
MF
DNA-binding transcription factor activity, RNA polymerase II-specific
GO slim(10 items)
BP
multicellular organismal process
BP
transcription, DNA-templated
MF
nucleic acid binding
BP
regulation of biological process
BP
developmental process
BP
regulation of molecular function
MF
lipid binding

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.