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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G17460.2
PEP
AT1G17460.2
Position on the Genome Chromosome Chr1
Start Position 5999519
End Position 6002546
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI01270426
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
SANT/Myb domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
TRF-like 3
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00249
Pfam Description Details
InterPro ID
IPR009057,IPR017930,IPR001005
InterPro Description Details
GO ID
GO:0005634,GO:0022626
GO Description Details
GOslim ID
GO:0005634,GO:0005737,GO:0005840
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
MYB_related family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
TRF-like 3
OrthoDB(1 item)
94064at33090
SANT/Myb domain
Pfam(1 item)
 
Myb-like DNA-binding domain
InterPro(3 items)
 
Homeobox-like_sf
 
SANT/Myb domain
Gene ontology(2 items)
CC
cytosolic ribosome
GO slim(3 items)

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.