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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G16060.1
PEP
AT1G16060.1
Position on the Genome Chromosome Chr1
Start Position 5508563
End Position 5511609
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI02061845
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
AP2/ERF domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
AP2-like ethylene-responsive transcription factor At1g16060
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
KO ID
NA
Pfam ID
PF00847
Pfam Description Details
InterPro ID
IPR001471,IPR036955,IPR016177
InterPro Description Details
GO ID
GO:0003700,GO:0040008,GO:1901959,GO:0009873,GO:0009737,GO:0045723,GO:0010187,GO:0000981,GO:0005634,GO:0009651,GO:0003677,GO:0009414
GO Description Details
GOslim ID
GO:0050896,GO:0065009,GO:0005634,GO:0050789,GO:0040007,GO:0003676,GO:0006351,GO:0044255,GO:0006082,GO:0032502,GO:0009059,GO:0042180,GO:0005694,GO:0007154,GO:0005575,GO:0032501
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
AP2 family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments ath:AT1G16060
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
AP2-like ethylene-responsive transcription factor At1g16060
OrthoDB(1 item)
176257at33090
AP2/ERF domain
Pfam(1 item)
 
AP2 domain
InterPro(3 items)
 
AP2/ERF domain
 
AP2/ERF_dom_sf
 
DNA-bd_dom_sf
Gene ontology(12 items)
MF
DNA-binding transcription factor activity
BP
regulation of growth
BP
positive regulation of cutin biosynthetic process
BP
ethylene-activated signaling pathway
BP
response to abscisic acid
BP
positive regulation of fatty acid biosynthetic process
BP
negative regulation of seed germination
MF
DNA-binding transcription factor activity, RNA polymerase II-specific
BP
response to salt stress
BP
response to water deprivation
GO slim(16 items)
BP
response to stimulus
BP
regulation of molecular function
BP
regulation of biological process
MF
nucleic acid binding
BP
transcription, DNA-templated
BP
cellular lipid metabolic process
BP
organic acid metabolic process
BP
developmental process
BP
macromolecule biosynthetic process
BP
cellular ketone metabolic process
BP
cell communication
CC
cellular_component
BP
multicellular organismal process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.