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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G15370.1
PEP
AT1G15370.1
Position on the Genome Chromosome Chr1
Start Position 5287135
End Position 5288375
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00044683
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Longin-like domain superfamily
Gene ID
Ortholog group unique ID
Functional annotation Source DB
trembl
Protein name
Coatomer subunit zeta
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
NA
Pfam Description
InterPro ID
IPR039652,IPR011012
InterPro Description Details
GO ID
GO:0030126,GO:0000139,GO:0015031,GO:0006890
GO Description Details
GOslim ID
GO:0031982,GO:0016192,GO:0015031,GO:0032991,GO:0005794
GO slim Description Details
Transcription Factor (TF) family 
NA
TF family Description
NA
Best hit taxonomy Species Arabidopsis lyrata subsp. lyrata
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Coatomer subunit zeta
OrthoDB(1 item)
193013at33090
Longin-like domain superfamily
InterPro(2 items)
 
Coatomer_zeta
 
Longin-like_dom_sf
Gene ontology(4 items)
CC
COPI vesicle coat
CC
Golgi membrane
BP
protein transport
BP
retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO slim(5 items)
BP
vesicle-mediated transport
BP
protein transport
CC
protein-containing complex
CC
Golgi apparatus

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.