Plant GARDEN How To ▶︎

JA

EN

Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G13300.1
PEP
AT1G13300.1
Position on the Genome Chromosome Chr1
Start Position 4556977
End Position 4558591
Strand +
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00579665
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
Myb domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Transcription factor HRS1
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
NA
Pfam Description
InterPro ID
IPR006447,IPR009057,IPR017930
InterPro Description Details
GO ID
GO:0080022,GO:0032107,GO:0003677,GO:0005634,GO:0006355,GO:0016036,GO:0003700,GO:1901699,GO:0009788,GO:0071456
GO Description Details
GOslim ID
GO:0050896,GO:0050789,GO:0003676,GO:0032501,GO:0032502,GO:0006351,GO:0065009,GO:0007154,GO:0005634
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
G2-like family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Transcription factor HRS1
OrthoDB(1 item)
131700at33090
Myb domain
InterPro(3 items)
 
Myb_dom_plants
 
Homeobox-like_sf
Gene ontology(10 items)
BP
primary root development
BP
regulation of response to nutrient levels
BP
regulation of transcription, DNA-templated
BP
cellular response to phosphate starvation
MF
DNA-binding transcription factor activity
BP
cellular response to nitrogen compound
BP
negative regulation of abscisic acid-activated signaling pathway
BP
cellular response to hypoxia
GO slim(9 items)
BP
response to stimulus
BP
regulation of biological process
MF
nucleic acid binding
BP
multicellular organismal process
BP
developmental process
BP
transcription, DNA-templated
BP
regulation of molecular function
BP
cell communication

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.