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Arabidopsis thaliana

Assembly Name:TAIR10

Gene File:Araport11_genes.201606.pep.fasta.gz

Detail of the Gene Sequence

Position on the Genome Gene Name CDS
AT1G12610.1
PEP
AT1G12610.1
Position on the Genome Chromosome Chr1
Start Position 4290205
End Position 4290834
Strand -
Annotation
(Hayai Annotation ZEN)
KusakiDB KusakiDB Accession
KUNI00592510
KusakiDB version 2
Evidence is present Yes
Databases intersection (the sequence exists in multiple databases)
orthodb-refseq-uniprot
OrthoDB Database version 10.1
Description
AP2/ERF domain
Gene ID
Ortholog group unique ID
Functional annotation Source DB
swissprot
Protein name
Dehydration-responsive element-binding protein 1F
Accession
CrossRef Refseq from UniProt
EC
NA
KEGG entry
NA
KO ID
NA
Pfam ID
PF00847
Pfam Description Details
InterPro ID
IPR001471,IPR016177,IPR036955
InterPro Description Details
GO ID
GO:0048510,GO:0050826,GO:0043565,GO:0051510,GO:0005634,GO:0009408,GO:0000976,GO:0010371,GO:0009414,GO:0003700,GO:0019760
GO Description Details
GOslim ID
GO:0050896,GO:0016043,GO:0032502,GO:0065009,GO:0019748,GO:0006790,GO:0006082,GO:0050789,GO:0005634,GO:0006807,GO:0006351,GO:0003676,GO:0016049,GO:0044255,GO:0042180
GO slim Description Details
Transcription Factor (TF) family 
TF family Description
ERF family protein
Best hit taxonomy Species Arabidopsis thaliana
Family Brassicaceae
Phylum Streptophyta
Superkingdom Eukaryota
Comments
gene , 遺伝子 , ecotype Col-0 , Brassicaceae , アブラナ科 , Arabidopsis , シロイヌナズナ属 , Thale cress , シロイヌナズナ Thale cress , シロイヌナズナ

Annotation Details

ID
Group/Domain
Name
Link
Source Annotation(1 item)
 
Dehydration-responsive element-binding protein 1F
OrthoDB(1 item)
198637at33090
AP2/ERF domain
Pfam(1 item)
 
AP2 domain
InterPro(3 items)
 
AP2/ERF domain
 
DNA-bd_dom_sf
 
AP2/ERF_dom_sf
Gene ontology(11 items)
BP
regulation of timing of transition from vegetative to reproductive phase
BP
response to freezing
MF
sequence-specific DNA binding
BP
regulation of unidimensional cell growth
BP
response to heat
MF
transcription regulatory region sequence-specific DNA binding
BP
regulation of gibberellin biosynthetic process
BP
response to water deprivation
MF
DNA-binding transcription factor activity
BP
glucosinolate metabolic process
GO slim(15 items)
BP
response to stimulus
BP
cellular component organization
BP
developmental process
BP
regulation of molecular function
BP
secondary metabolic process
BP
sulfur compound metabolic process
BP
organic acid metabolic process
BP
regulation of biological process
BP
nitrogen compound metabolic process
BP
transcription, DNA-templated
MF
nucleic acid binding
BP
cellular lipid metabolic process
BP
cellular ketone metabolic process

Similar Gene Sequences in Other Species

Sequences, which showing significant similarity, in other species, have not been registered.